2025-04-19T13:24:46 Running all scenarios... 2025-04-19T13:24:46 Setup file saved as stjones.cfg in results directory. 2025-04-19T13:24:46 Scenario: 2025-04-19T13:24:46 Camera network proxy for the camera found. Using proxy. 2025-04-19T13:24:46 Analyzing stjones Camera images: 2025-04-19T13:24:46 Establishing connection(s)... 2025-04-19T13:24:46 Looking for images... 2025-04-19T13:24:46 Crawling through 34 paths... 2025-04-19T13:24:48 73 possible files found. 2025-04-19T13:24:49 47 possible files found. 2025-04-19T13:24:51 123 possible files found. 2025-04-19T13:24:52 123 possible files found. 2025-04-19T13:24:52 123 possible files found. 2025-04-19T13:24:52 123 possible files found. 2025-04-19T13:24:53 123 possible files found. 2025-04-19T13:24:53 123 possible files found. 2025-04-19T13:24:53 123 possible files found. 2025-04-19T13:24:53 123 possible files found. 2025-04-19T13:24:53 123 possible files found. 2025-04-19T13:24:53 123 possible files found. 2025-04-19T13:24:53 123 possible files found. 2025-04-19T13:24:53 123 possible files found. 2025-04-19T13:24:53 123 possible files found. 2025-04-19T13:24:54 123 possible files found. 2025-04-19T13:24:54 123 possible files found. 2025-04-19T13:24:54 123 possible files found. 2025-04-19T13:24:54 123 possible files found. 2025-04-19T13:24:54 123 possible files found. 2025-04-19T13:24:54 121 possible files found. 2025-04-19T13:24:54 123 possible files found. 2025-04-19T13:24:54 123 possible files found. 2025-04-19T13:24:54 121 possible files found. 2025-04-19T13:24:54 117 possible files found. 2025-04-19T13:24:55 123 possible files found. 2025-04-19T13:24:55 119 possible files found. 2025-04-19T13:24:55 123 possible files found. 2025-04-19T13:24:55 123 possible files found. 2025-04-19T13:24:55 123 possible files found. 2025-04-19T13:24:55 123 possible files found. 2025-04-19T13:24:55 119 possible files found. 2025-04-19T13:24:55 123 possible files found. 2025-04-19T13:24:55 121 possible files found. 2025-04-19T13:24:56 Listing images between dates 2025-03-19 - 2025-04-19 between times of the day 05:15:00 - 18:45:59... 2025-04-19T13:24:56 830 images found. 2025-04-19T13:24:56 Running analysis 1: Plug-in: ml_ann_3_dense_reg_1... 2025-04-19T13:24:56 Reading results of image that are already processed... 2025-04-19T13:24:56 825 images are already processed. 32 images will be processed. Results of 27 images which do not fit the temporal selection will be deleted. 2025-04-19T13:24:56 Checking existing images... 2025-04-19T13:24:56 32 images to be downloaded. 2025-04-19T13:24:56 Downloading/updating images... 2025-04-19T13:27:56 32 images were downloaded. 2025-04-19T13:27:56 Producing polygonic image mask... 2025-04-19T13:27:56 Invalid image file: /FMIprot/srcrun/master_report/src/images/unsaved/PHENOCAM-HTTPS-phenocam.sr.unh.edu-None-webcam_browse_stjones__Y__m__d/ff256a20-ad49-4aee-a2e5-726ad92885fa/stjones_2025_04_17_163006.jpg 2025-04-19T13:27:56 Invalid image file: /FMIprot/srcrun/master_report/src/images/unsaved/PHENOCAM-HTTPS-phenocam.sr.unh.edu-None-webcam_browse_stjones__Y__m__d/ff256a20-ad49-4aee-a2e5-726ad92885fa/stjones_2025_04_17_170006.jpg 2025-04-19T13:27:57 No polygonic masking selected. 2025-04-19T13:27:57 Number of unmasked pixels: 1244160 2025-04-19T13:27:57 Number of images:32 2025-04-19T13:27:57 Testing plugin for batch processing. 2025-04-19T13:27:57 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/19757dc3-6e40-4bac-86b4-39f30f95cbf8/batch_list.csv 2025-04-19T13:27:57 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running. 2025-04-19T13:28:01 Plugin output: Loading the model 2025-04-19T13:28:01 Plugin output: Reading batch list file 2025-04-19T13:28:01 Plugin output: 1 images to process 2025-04-19T13:28:01 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run. 2025-04-19T13:28:01 Plugin output: Processing images and saving results 2025-04-19T13:28:01 Plugin output: Processing stjones_2025_04_17_163006.jpg failed. Image skipped. 2025-04-19T13:28:01 Plugin output: cannot identify image file <_io.BytesIO object at 0x7f051c39ba10> 2025-04-19T13:28:01 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/19757dc3-6e40-4bac-86b4-39f30f95cbf8/batch_results.csv 2025-04-19T13:28:02 2025-04-19T13:28:02 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/19757dc3-6e40-4bac-86b4-39f30f95cbf8/batch_results.csv 2025-04-19T13:28:02 Test successful. Plugin supports batch processing. 2025-04-19T13:28:02 Creating image and mask list to submit to the plugin. 2025-04-19T13:28:02 List file saved at /FMIprot/srcrun/master_report/src/tmp/19757dc3-6e40-4bac-86b4-39f30f95cbf8/batch_list.csv 2025-04-19T13:28:02 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running. 2025-04-19T13:28:11 Plugin output: Loading the model 2025-04-19T13:28:11 Plugin output: Reading batch list file 2025-04-19T13:28:11 Plugin output: 32 images to process 2025-04-19T13:28:11 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run. 2025-04-19T13:28:11 Plugin output: Processing images and saving results 2025-04-19T13:28:11 Plugin output: Processing stjones_2025_04_17_163006.jpg failed. Image skipped. 2025-04-19T13:28:11 Plugin output: cannot identify image file <_io.BytesIO object at 0x7f6175f02a70> 2025-04-19T13:28:11 Plugin output: Processing stjones_2025_04_17_170006.jpg failed. Image skipped. 2025-04-19T13:28:11 Plugin output: cannot identify image file <_io.BytesIO object at 0x7f6175f02a70> 2025-04-19T13:28:11 Plugin output: Processing stjones_2025_04_18_100005.jpg failed. Image skipped. 2025-04-19T13:28:11 Plugin output: cannot identify image file <_io.BytesIO object at 0x7f6198f3bf10> 2025-04-19T13:28:11 Plugin output: Processing stjones_2025_04_18_103005.jpg failed. Image skipped. 2025-04-19T13:28:11 Plugin output: cannot identify image file <_io.BytesIO object at 0x7f6175eacfe0> 2025-04-19T13:28:11 Plugin output: Processing stjones_2025_04_18_110006.jpg failed. Image skipped. 2025-04-19T13:28:11 Plugin output: cannot identify image file <_io.BytesIO object at 0x7f6175eacfe0> 2025-04-19T13:28:11 Plugin output: Processing stjones_2025_04_18_160006.jpg failed. Image skipped. 2025-04-19T13:28:11 Plugin output: cannot identify image file <_io.BytesIO object at 0x7f6198f6a750> 2025-04-19T13:28:11 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/19757dc3-6e40-4bac-86b4-39f30f95cbf8/batch_results.csv 2025-04-19T13:28:12 2025-04-19T13:28:12 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/19757dc3-6e40-4bac-86b4-39f30f95cbf8/batch_results.csv 2025-04-19T13:28:12 Parsing results... 2025-04-19T13:28:12 Merging results... 2025-04-19T13:28:12 Storing results... 2025-04-19T13:28:12 Results are stored in /var/www/html/data/operational/phenocam_ml_p3_nrt/stjones/S001A001R000.tsv, /var/www/html/data/operational/phenocam_ml_p3_nrt/stjones/S001A001R000.tsvx. 2025-04-19T13:28:12 Results are stored in /var/www/html/data/operational/phenocam_ml_p3_nrt/stjones/S001A001R000.csv. 2025-04-19T13:28:12 Running analysis 2: Plug-in: ml_cnn_large_kernel_1... 2025-04-19T13:28:12 Reading results of image that are already processed... 2025-04-19T13:28:12 825 images are already processed. 32 images will be processed. Results of 27 images which do not fit the temporal selection will be deleted. 2025-04-19T13:28:12 Checking existing images... 2025-04-19T13:28:12 0 images to be downloaded. 2025-04-19T13:28:12 Producing polygonic image mask... 2025-04-19T13:28:12 Invalid image file: /FMIprot/srcrun/master_report/src/images/unsaved/PHENOCAM-HTTPS-phenocam.sr.unh.edu-None-webcam_browse_stjones__Y__m__d/ff256a20-ad49-4aee-a2e5-726ad92885fa/stjones_2025_04_17_163006.jpg 2025-04-19T13:28:12 Invalid image file: /FMIprot/srcrun/master_report/src/images/unsaved/PHENOCAM-HTTPS-phenocam.sr.unh.edu-None-webcam_browse_stjones__Y__m__d/ff256a20-ad49-4aee-a2e5-726ad92885fa/stjones_2025_04_17_170006.jpg 2025-04-19T13:28:12 No polygonic masking selected. 2025-04-19T13:28:12 Number of unmasked pixels: 1244160 2025-04-19T13:28:12 Number of images:32 2025-04-19T13:28:12 Testing plugin for batch processing. 2025-04-19T13:28:12 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/9ce874e2-7231-4f6d-b346-38c9ada284a0/batch_list.csv 2025-04-19T13:28:12 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running. 2025-04-19T13:28:16 Plugin output: Loading the model 2025-04-19T13:28:16 Plugin output: Reading batch list file 2025-04-19T13:28:16 Plugin output: 1 images to process 2025-04-19T13:28:16 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run. 2025-04-19T13:28:16 Plugin output: Processing images and saving results 2025-04-19T13:28:16 Plugin output: Processing stjones_2025_04_17_163006.jpg failed. Image skipped. 2025-04-19T13:28:16 Plugin output: cannot identify image file <_io.BytesIO object at 0x7fcfbc6acef0> 2025-04-19T13:28:16 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/9ce874e2-7231-4f6d-b346-38c9ada284a0/batch_results.csv 2025-04-19T13:28:16 2025-04-19T13:28:16 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/9ce874e2-7231-4f6d-b346-38c9ada284a0/batch_results.csv 2025-04-19T13:28:16 Test successful. Plugin supports batch processing. 2025-04-19T13:28:16 Creating image and mask list to submit to the plugin. 2025-04-19T13:28:16 List file saved at /FMIprot/srcrun/master_report/src/tmp/9ce874e2-7231-4f6d-b346-38c9ada284a0/batch_list.csv 2025-04-19T13:28:16 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running. 2025-04-19T13:28:23 Plugin output: Loading the model 2025-04-19T13:28:23 Plugin output: Reading batch list file 2025-04-19T13:28:23 Plugin output: 32 images to process 2025-04-19T13:28:23 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run. 2025-04-19T13:28:23 Plugin output: Processing images and saving results 2025-04-19T13:28:23 Plugin output: Processing stjones_2025_04_17_163006.jpg failed. Image skipped. 2025-04-19T13:28:23 Plugin output: cannot identify image file <_io.BytesIO object at 0x7fcbf0fc4db0> 2025-04-19T13:28:23 Plugin output: Processing stjones_2025_04_17_170006.jpg failed. Image skipped. 2025-04-19T13:28:23 Plugin output: cannot identify image file <_io.BytesIO object at 0x7fcbf0fc4db0> 2025-04-19T13:28:23 Plugin output: Processing stjones_2025_04_18_100005.jpg failed. Image skipped. 2025-04-19T13:28:23 Plugin output: cannot identify image file <_io.BytesIO object at 0x7fcbf056cb30> 2025-04-19T13:28:23 Plugin output: Processing stjones_2025_04_18_103005.jpg failed. Image skipped. 2025-04-19T13:28:23 Plugin output: cannot identify image file <_io.BytesIO object at 0x7fcbf872cf40> 2025-04-19T13:28:23 Plugin output: Processing stjones_2025_04_18_110006.jpg failed. Image skipped. 2025-04-19T13:28:23 Plugin output: cannot identify image file <_io.BytesIO object at 0x7fcbf872cf40> 2025-04-19T13:28:23 Plugin output: Processing stjones_2025_04_18_160006.jpg failed. Image skipped. 2025-04-19T13:28:23 Plugin output: cannot identify image file <_io.BytesIO object at 0x7fcbf2f3fb00> 2025-04-19T13:28:23 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/9ce874e2-7231-4f6d-b346-38c9ada284a0/batch_results.csv 2025-04-19T13:28:24 2025-04-19T13:28:24 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/9ce874e2-7231-4f6d-b346-38c9ada284a0/batch_results.csv 2025-04-19T13:28:24 Parsing results... 2025-04-19T13:28:24 Merging results... 2025-04-19T13:28:24 Storing results... 2025-04-19T13:28:24 Results are stored in /var/www/html/data/operational/phenocam_ml_p3_nrt/stjones/S001A002R000.tsv, /var/www/html/data/operational/phenocam_ml_p3_nrt/stjones/S001A002R000.tsvx. 2025-04-19T13:28:24 Results are stored in /var/www/html/data/operational/phenocam_ml_p3_nrt/stjones/S001A002R000.csv. 2025-04-19T13:28:24 Scenario: 2025-04-19T13:28:24 Removing (32) downloaded images to save space. 2025-04-19T13:28:24 Camera network proxy for the camera found. Using proxy. 2025-04-19T13:28:24 Checking preview image for stjones... 2025-04-19T13:28:24 Updating preview image for camera: PHENOCAM - stjones 2025-04-19T13:28:24 Looking for the image for the Time of the image to be used as preview image provided by the setup file.... 2025-04-19T13:28:24 Establishing connection(s)... 2025-04-19T13:28:24 Looking for images... 2025-04-19T13:28:24 120 possible files found. 2025-04-19T13:28:24 Listing maximum 1 images between dates 2020-12-05 - 2020-12-05 between times of the day 12:20:00 - 12:20:59... 2025-04-19T13:28:24 Listing maximum 1 images between dates 2020-12-05 - 2020-12-05 between times of the day 12:20:00 - 12:20:59... 2025-04-19T13:28:24 0 images found. 2025-04-19T13:28:24 Checking existing images... 2025-04-19T13:28:24 0 images to be downloaded. 2025-04-19T13:28:24 Can not find the image for the Time of the image to be used as preview image provided by the setup file. It is removed from the setup. 2025-04-19T13:28:24 Looking for a suitable image... 2025-04-19T13:28:24 18.04.2025 2025-04-19T13:28:24 Establishing connection(s)... 2025-04-19T13:28:24 Looking for images... 2025-04-19T13:28:25 123 possible files found. 2025-04-19T13:28:25 Listing maximum 1 images between dates 2025-04-18 - 2025-04-18 between times of the day 09:00:00 - 18:59:59... 2025-04-19T13:28:25 Listing maximum 1 images between dates 2025-04-18 - 2025-04-18 between times of the day 09:00:00 - 18:59:59... 2025-04-19T13:28:25 1 images found. 2025-04-19T13:28:25 Checking existing images... 2025-04-19T13:28:25 1 images to be downloaded. 2025-04-19T13:28:25 Downloading/updating images... 2025-04-19T13:28:26 Image: 2025-04-19T13:28:26 1 images were downloaded. 2025-04-19T13:28:26 Preview image downloaded/updated for camera: PHENOCAM - stjones 2025-04-19T13:28:29 Preparing report... 2025-04-19T13:28:29 Result plots are saved as /var/www/html/data/operational/phenocam_ml_p3_nrt/stjones/results.html 2025-04-19T13:28:29 Report is saved as /var/www/html/data/operational/phenocam_ml_p3_nrt/stjones/report.html