2025-04-19T17:51:33 Running all scenarios...
2025-04-19T17:51:33 Setup file saved as harvardhemlock2.cfg in results directory. 
2025-04-19T17:51:33 Scenario: 
2025-04-19T17:51:33 Camera network proxy for the camera found. Using proxy.
2025-04-19T17:51:33 Analyzing harvardhemlock2 Camera images:
2025-04-19T17:51:33 Establishing connection(s)...
2025-04-19T17:51:33 Looking for images...
2025-04-19T17:51:33 Crawling through 34 paths...
2025-04-19T17:51:35 73 possible files found.
2025-04-19T17:51:36 49 possible files found.
2025-04-19T17:51:37 117 possible files found.
2025-04-19T17:51:39 117 possible files found.
2025-04-19T17:51:39 117 possible files found.
2025-04-19T17:51:39 117 possible files found.
2025-04-19T17:51:39 117 possible files found.
2025-04-19T17:51:39 65 possible files found.
2025-04-19T17:51:39 117 possible files found.
2025-04-19T17:51:39 117 possible files found.
2025-04-19T17:51:39 117 possible files found.
2025-04-19T17:51:39 117 possible files found.
2025-04-19T17:51:40 117 possible files found.
2025-04-19T17:51:40 117 possible files found.
2025-04-19T17:51:40 117 possible files found.
2025-04-19T17:51:40 117 possible files found.
2025-04-19T17:51:40 117 possible files found.
2025-04-19T17:51:40 117 possible files found.
2025-04-19T17:51:40 117 possible files found.
2025-04-19T17:51:40 115 possible files found.
2025-04-19T17:51:40 117 possible files found.
2025-04-19T17:51:41 117 possible files found.
2025-04-19T17:51:41 117 possible files found.
2025-04-19T17:51:41 117 possible files found.
2025-04-19T17:51:41 117 possible files found.
2025-04-19T17:51:41 117 possible files found.
2025-04-19T17:51:41 117 possible files found.
2025-04-19T17:51:41 117 possible files found.
2025-04-19T17:51:41 117 possible files found.
2025-04-19T17:51:41 117 possible files found.
2025-04-19T17:51:41 117 possible files found.
2025-04-19T17:51:42 117 possible files found.
2025-04-19T17:51:42 117 possible files found.
2025-04-19T17:51:42 117 possible files found.
2025-04-19T17:51:42 Listing images between dates 2025-03-19 - 2025-04-19 between times of the day 05:15:00 - 18:45:59...
2025-04-19T17:51:42 816 images found.
2025-04-19T17:51:42 Running analysis 1: Plug-in: ml_ann_3_dense_reg_1...
2025-04-19T17:51:42 Reading results of image that are already processed...
2025-04-19T17:51:42 816 images are already processed. 27 images will be processed. Results of 27 images which do not fit the temporal selection will be deleted.
2025-04-19T17:51:42 Checking existing images...
2025-04-19T17:51:42 27 images to be downloaded.
2025-04-19T17:51:42 Downloading/updating images...
2025-04-19T17:52:22 27 images were downloaded.
2025-04-19T17:52:22 Producing polygonic image mask...
2025-04-19T17:52:22 No polygonic masking selected.
2025-04-19T17:52:22 Number of unmasked pixels: 1244160
2025-04-19T17:52:22 Number of images:27
2025-04-19T17:52:22 Testing plugin for batch processing.
2025-04-19T17:52:22 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/ba704240-ea3d-4a8c-81a3-1057caf317a0/batch_list.csv
2025-04-19T17:52:22 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-19T17:52:27 Plugin output: Loading the model

2025-04-19T17:52:27 Plugin output: Reading batch list file

2025-04-19T17:52:27 Plugin output: 1 images to process

2025-04-19T17:52:27 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-19T17:52:27 Plugin output: Processing images and saving results

2025-04-19T17:52:27 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/ba704240-ea3d-4a8c-81a3-1057caf317a0/batch_results.csv

2025-04-19T17:52:28 
2025-04-19T17:52:28 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/ba704240-ea3d-4a8c-81a3-1057caf317a0/batch_results.csv
2025-04-19T17:52:28 Test successful. Plugin supports batch processing.
2025-04-19T17:52:28 Creating image and mask list to submit to the plugin.
2025-04-19T17:52:28 List file saved at /FMIprot/srcrun/master_report/src/tmp/ba704240-ea3d-4a8c-81a3-1057caf317a0/batch_list.csv
2025-04-19T17:52:28 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-19T17:52:37 Plugin output: Loading the model

2025-04-19T17:52:37 Plugin output: Reading batch list file

2025-04-19T17:52:37 Plugin output: 27 images to process

2025-04-19T17:52:37 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-19T17:52:37 Plugin output: Processing images and saving results

2025-04-19T17:52:37 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/ba704240-ea3d-4a8c-81a3-1057caf317a0/batch_results.csv

2025-04-19T17:52:38 
2025-04-19T17:52:38 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/ba704240-ea3d-4a8c-81a3-1057caf317a0/batch_results.csv
2025-04-19T17:52:38 Parsing results...
2025-04-19T17:52:38 Merging results...
2025-04-19T17:52:38 Storing results...
2025-04-19T17:52:38 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/S001A001R000.tsv, /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/S001A001R000.tsvx.
2025-04-19T17:52:38 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/S001A001R000.csv.
2025-04-19T17:52:38 Running analysis 2: Plug-in: ml_cnn_large_kernel_1...
2025-04-19T17:52:38 Reading results of image that are already processed...
2025-04-19T17:52:38 816 images are already processed. 27 images will be processed. Results of 27 images which do not fit the temporal selection will be deleted.
2025-04-19T17:52:38 Checking existing images...
2025-04-19T17:52:38 0 images to be downloaded.
2025-04-19T17:52:38 Producing polygonic image mask...
2025-04-19T17:52:38 No polygonic masking selected.
2025-04-19T17:52:38 Number of unmasked pixels: 1244160
2025-04-19T17:52:38 Number of images:27
2025-04-19T17:52:38 Testing plugin for batch processing.
2025-04-19T17:52:38 Test list file saved at /FMIprot/srcrun/master_report/src/tmp/c10f3aad-86e5-470b-b8c7-f5687b0332ca/batch_list.csv
2025-04-19T17:52:38 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-19T17:52:42 Plugin output: Loading the model

2025-04-19T17:52:42 Plugin output: Reading batch list file

2025-04-19T17:52:42 Plugin output: 1 images to process

2025-04-19T17:52:42 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-19T17:52:42 Plugin output: Processing images and saving results

2025-04-19T17:52:42 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/c10f3aad-86e5-470b-b8c7-f5687b0332ca/batch_results.csv

2025-04-19T17:52:43 
2025-04-19T17:52:43 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/c10f3aad-86e5-470b-b8c7-f5687b0332ca/batch_results.csv
2025-04-19T17:52:43 Test successful. Plugin supports batch processing.
2025-04-19T17:52:43 Creating image and mask list to submit to the plugin.
2025-04-19T17:52:43 List file saved at /FMIprot/srcrun/master_report/src/tmp/c10f3aad-86e5-470b-b8c7-f5687b0332ca/batch_list.csv
2025-04-19T17:52:43 Submitting image and mask list to the plugin. There may be no logging until the plugin ends running.
2025-04-19T17:52:51 Plugin output: Loading the model

2025-04-19T17:52:51 Plugin output: Reading batch list file

2025-04-19T17:52:51 Plugin output: 27 images to process

2025-04-19T17:52:51 Plugin output: Limiting number of images to 5000 since the plugin crashes. More images will be processed in the next run.

2025-04-19T17:52:51 Plugin output: Processing images and saving results

2025-04-19T17:52:51 Plugin output: Results saved at /FMIprot/srcrun/master_report/src/tmp/c10f3aad-86e5-470b-b8c7-f5687b0332ca/batch_results.csv

2025-04-19T17:52:51 
2025-04-19T17:52:51 Results should be saved at /FMIprot/srcrun/master_report/src/tmp/c10f3aad-86e5-470b-b8c7-f5687b0332ca/batch_results.csv
2025-04-19T17:52:51 Parsing results...
2025-04-19T17:52:51 Merging results...
2025-04-19T17:52:51 Storing results...
2025-04-19T17:52:51 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/S001A002R000.tsv, /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/S001A002R000.tsvx.
2025-04-19T17:52:51 Results are stored in /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/S001A002R000.csv.
2025-04-19T17:52:51 Scenario: 
2025-04-19T17:52:51 Removing (27) downloaded images to save space.
2025-04-19T17:52:51 Camera network proxy for the camera found. Using proxy.
2025-04-19T17:52:51 Checking preview image for harvardhemlock2...
2025-04-19T17:52:51 Updating preview image for camera: PHENOCAM - harvardhemlock2
2025-04-19T17:52:51 Looking for the image for the Time of the image to be used as preview image provided by the setup file....
2025-04-19T17:52:51 Establishing connection(s)...
2025-04-19T17:52:51 Looking for images...
2025-04-19T17:52:51 110 possible files found.
2025-04-19T17:52:51 Listing maximum 1 images between dates 2020-12-05 - 2020-12-05 between times of the day 12:20:00 - 12:20:59...
2025-04-19T17:52:51 Listing maximum 1 images between dates 2020-12-05 - 2020-12-05 between times of the day 12:20:00 - 12:20:59...
2025-04-19T17:52:51 0 images found.
2025-04-19T17:52:51 Checking existing images...
2025-04-19T17:52:51 0 images to be downloaded.
2025-04-19T17:52:51 Can not find the image for the Time of the image to be used as preview image provided by the setup file. It is removed from the setup.
2025-04-19T17:52:51 Looking for a suitable image...
2025-04-19T17:52:51 18.04.2025
2025-04-19T17:52:51 Establishing connection(s)...
2025-04-19T17:52:51 Looking for images...
2025-04-19T17:52:53 117 possible files found.
2025-04-19T17:52:53 Listing maximum 1 images between dates 2025-04-18 - 2025-04-18 between times of the day 09:00:00 - 18:59:59...
2025-04-19T17:52:53 Listing maximum 1 images between dates 2025-04-18 - 2025-04-18 between times of the day 09:00:00 - 18:59:59...
2025-04-19T17:52:53 1 images found.
2025-04-19T17:52:53 Checking existing images...
2025-04-19T17:52:53 1 images to be downloaded.
2025-04-19T17:52:53 Downloading/updating images...
2025-04-19T17:52:53 Image: 
2025-04-19T17:52:53 1 images were downloaded.
2025-04-19T17:52:53 Preview image downloaded/updated for camera: PHENOCAM - harvardhemlock2
2025-04-19T17:52:56 Preparing report...
2025-04-19T17:52:56 Result plots are saved as /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/results.html
2025-04-19T17:52:56 Report is saved as /var/www/html/data/operational/phenocam_ml_p1_nrt/harvardhemlock2/report.html